Reference
Reference TypeLiterature
TitleCIITA-Transduced Glioblastoma Cells Uncover a Rich Repertoire of Clinically Relevant Tumor-Associated HLA-II Antigens.
AuthorsGreta Forlani; Justine Michaux; HuiSong Pak; Florian Huber; Elodie Lauret Marie Joseph; Elise Ramia; Brian J Stevenson; Michael Linnebacher; Roberto S Accolla; Michal Bassani-Sternberg
AffiliationsLaboratories of General Pathology and Immunology "Giovanna Tosi", Department of Medicine and Surgery, School of Medicine, University of Insubria, Varese, Italy; Ludwig Cancer Research Center, University of Lausanne, Lausanne, Switzerland; Department of Oncology, Centre Hospitalier Universitaire Vaudois (CHUV), Lausanne, Switzerland; SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland; Department of General Surgery, Molecular Oncology and Immunotherapy, University Medical Center Rostock, Rostock, Germany; Department of Oncology, Centre Hospitalier Universitaire Vaudois (CHUV), Lausanne, Switzerland. Electronic address: Michal.bassani@chuv.ch.
JournalMol Cell Proteomics
Year2021
AbstractCD4+ T cell responses are crucial for inducing and maintaining effective anticancer immunity, and the identification of human leukocyte antigen class II (HLA-II) cancer-specific epitopes is key to the development of potent cancer immunotherapies. In many tumor types, and especially in glioblastoma (GBM), HLA-II complexes are hardly ever naturally expressed. Hence, little is known about immunogenic HLA-II epitopes in GBM. With stable expression of the class II major histocompatibility complex transactivator (CIITA) coupled to a detailed and sensitive mass spectrometry-based immunopeptidomics analysis, we here uncovered a remarkable breadth of the HLA-ligandome in HROG02, HROG17, and RA GBM cell lines. The effect of CIITA expression on the induction of the HLA-II presentation machinery was striking in each of the three cell lines, and it was significantly higher compared with interferon gamma (IFNɣ) treatment. In total, we identified 16,123 unique HLA-I peptides and 32,690 unique HLA-II peptides. In order to genuinely define the identified peptides as true HLA ligands, we carefully characterized their association with the different HLA allotypes. In addition, we identified 138 and 279 HLA-I and HLA-II ligands, respectively, most of which are novel in GBM, derived from known GBM-associated tumor antigens that have been used as source proteins for a variety of GBM vaccines. Our data further indicate that CIITA-expressing GBM cells acquired an antigen presenting cell-like phenotype as we found that they directly present external proteins as HLA-II ligands. Not only that CIITA-expressing GBM cells are attractive models for antigen discovery endeavors, but also such engineered cells have great therapeutic potential through massive presentation of a diverse antigenic repertoire.
Curation Last Updated2025-03-04 22:38:05
Epitope
Epitope ID1603304
Chemical TypeLinear peptide
Linear SequenceERDKEVSDDEAEEKED
Source Molecule NameHeat shock protein HSP 90-alpha
Source OrganismHomo sapiens (human)
Starting Position225
Ending Position240
Epitope Reference Details
Epitope Structure DefinesEpitope containing region/antigenic site
Epitope NameEluted Peptide 6299
Location of Data in ReferenceSupplementary Table S5
In Vivo Processing
Host OrganismHomo sapiens (human)
In Vivo Process
In Vivo Process TypeOccurrence of cancer
Disease Stateglioblastoma
Disease StageUnknown;
Antigen Processing Comments
Antigen Processing CommentsEpitopes were eluted from the HROG02, HROG17 (PMID 23951083), and RA (PMID 30695232) glioblastoma cell lines, with or without treatement with the class II major histocompatibility complex transactivator (CIITA).
MHC Ligand Assay
Qualitative MeasurementPositive
Method/Techniquecellular MHC/mass spectrometry
Measurement ofligand presentation
Antigen Presenting Cells
Cell Tissue TypeCentral nervous system (CNS)
Cell TypeHROG02-Glial Cell
Cell Culture ConditionsCell Line / Clone
MHC Allele
MHC Allele NameHLA-DQA1*02:01/DQB1*02:02
MHC Evidence CodeStatistically inferred by motif or alleles present
MHC Ligand
Epitope RelationEpitope
Chemical TypeLinear peptide
Linear SequenceERDKEVSDDEAEEKED
Source Molecule NameHeat shock protein HSP 90-alpha
Source OrganismHomo sapiens (human)
Starting Position225
Ending Position240
Assay Reference Details
Assay Comments by IEDB CuratorThe epitope was eluted from the following conditions: HRGO02 cells treated with CIITA.
Location of Assay Data in ReferenceSupplementary Table S5